Multiwfn official website: http://sobereva.com/multiwfn. Multiwfn forum in Chinese: http://bbs.keinsci.com/wfn
You are not logged in.
Pages: 1
Hello Tian,
I have been running Multiwfn on a supercomputer (software installed as a module) in batch mode through a bash script with .fchk files as input. The software seems to be working with a few structures and not with others. The error output when running Multiwfn in both batch/silent mode and interactive mode is the same as shown below:
forrtl: severe (174): SIGSEGV, segmentation fault occurred
Image PC Routine Line Source
Multiwfn 00000000020BE6F3 Unknown Unknown Unknown
libpthread-2.28.s 00007F76B3ED7CF0 Unknown Unknown Unknown
Multiwfn 0000000000551958 Unknown Unknown Unknown
Multiwfn 000000000077C404 Unknown Unknown Unknown
Multiwfn 0000000000710B92 Unknown Unknown Unknown
Multiwfn 00000000008529C5 Unknown Unknown Unknown
Multiwfn 0000000000431822 Unknown Unknown Unknown
libc-2.28.so 00007F76B3B3AD85 __libc_start_main Unknown Unknown
Multiwfn 0000000000431729 Unknown Unknown Unknown
I am using Multiwfn version 3.8. Here is a snippet of the bash script I am using to run Multiwfn in batch mode to give molecular ESP minima and maxima values:
#!/bin/bash
## Job parameters
#SBATCH -p shared
#SBATCH -c 4
#SBATCH --mem=10G
#SBATCH --gres=tmp:10G
#SBATCH -J MWFN_AC
#SBATCH -t 00-00:30:00
## Errors and outputs
#SBATCH -o output_%j.out
#SBATCH -e errors_%j.err
module load multiwfn/3.8
mkdir multiwfn_inputs
cd fchk_files
cp *.fchk ../multiwfn_inputs
cd ../multiwfn_inputs
for i in *.fchk; do mkdir ${i%.fchk}; mv $i ${i%.fchk}; done
for j in */
do cd $j
for x in *.fchk
do echo Running ${x} ...; echo -e "12\n0\n2\n6\n5\nESP.pdb\n-1\n-1\nq\n" | Multiwfn ${x} > ./${x%.fchk}_ESP.txt
mv ESP.pdb ${x%.fchk}.pdb
done
cd ../
done
The single point Gaussian calculations for all test systems were done with the same functional and basis set combination (wB97XD/Def2QZVPP). The systems tested were small organic molecules of similar size. The software works for 2-acetamidobenzamide, methanol and paracetamol. It crashes with picolinamide, benzamide, and nicotinamide.
I can share the .fchk files with you by email if that might be helpful.
Thanks very much
Pages: 1