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		<title><![CDATA[Multiwfn forum / Integrate orbital density in external basins]]></title>
		<link>http://sobereva.com/wfnbbs/viewtopic.php?id=678</link>
		<description><![CDATA[The most recent posts in Integrate orbital density in external basins.]]></description>
		<lastBuildDate>Tue, 21 Jun 2022 14:28:12 +0000</lastBuildDate>
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			<title><![CDATA[Re: Integrate orbital density in external basins]]></title>
			<link>http://sobereva.com/wfnbbs/viewtopic.php?pid=2560#p2560</link>
			<description><![CDATA[<p>Oooh, of course, because you integrate Gauss functions which are part of all MOs. Sorry, my bad. <img src="http://sobereva.com/wfnbbs/img/smilies/smile.png" width="15" height="15" alt="smile" /><br />Thanks a lot, I will just bite the bullet of long calculations then. <img src="http://sobereva.com/wfnbbs/img/smilies/big_smile.png" width="15" height="15" alt="big_smile" /></p>]]></description>
			<author><![CDATA[dummy@example.com (Aerael)]]></author>
			<pubDate>Tue, 21 Jun 2022 14:28:12 +0000</pubDate>
			<guid>http://sobereva.com/wfnbbs/viewtopic.php?pid=2560#p2560</guid>
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			<title><![CDATA[Re: Integrate orbital density in external basins]]></title>
			<link>http://sobereva.com/wfnbbs/viewtopic.php?pid=2559#p2559</link>
			<description><![CDATA[<p>Dear Daniel,</p><p>In fact, there is no significant difference in cost of calculating compositions of 50 and 1000 MOs, because the most time-consuming intermediate data is shared by all orbitals.</p><p>You can extract needed data only by using one command. For example, extracting contribution of basin 5 to all orbitals, you can input</p><div class="codebox"><pre><code>grep &quot;     5 &quot; orbcomp.txt |nl</code></pre></div><p>The result is</p><div class="codebox"><pre><code>     1       5      0.000 % 
     2       5      0.000 % 
     3       5      0.000 % 
     4       5     99.998 % 
     5       5      1.094 % 
     6       5      0.324 % 
     7       5     54.351 % 
     8       5      3.155 % 
     9       5     27.365 % 
    10       5     26.118 % 
    11       5     22.939 % 
    12       5     18.619 % 
    13       5     20.657 % 
    14       5     15.225 % 
    15       5      0.260 % 
    16       5      8.655 % </code></pre></div><p>So, contribution of basin 5 to e.g. MO 14 is 15.225%.</p><p>Best regards,</p><p>Tian</p>]]></description>
			<author><![CDATA[dummy@example.com (sobereva)]]></author>
			<pubDate>Tue, 21 Jun 2022 12:41:48 +0000</pubDate>
			<guid>http://sobereva.com/wfnbbs/viewtopic.php?pid=2559#p2559</guid>
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		<item>
			<title><![CDATA[Re: Integrate orbital density in external basins]]></title>
			<link>http://sobereva.com/wfnbbs/viewtopic.php?pid=2558#p2558</link>
			<description><![CDATA[<p>Thank you Tian,</p><br /><p>Yes, I am aware of that. I AM currently exporting all MOs at once with the -4 option, as you suggest.</p><p>The thing is, integrating 1000 MOs takes a lot more time than integrating 50 MOs, and I am (currently) mainly interested in the occupied ones, which leaves me with 95% junk (waste of computation time and ressources).<br />I was just trying to save some energy, and at the same time not do 50 MOs separately by hand. <img src="http://sobereva.com/wfnbbs/img/smilies/big_smile.png" width="15" height="15" alt="big_smile" /></p><p>It&#039;s not an urgent request, I just thought it might be a small and quick upgrade to a very useful utility. ^^</p><br /><p>Thanks so much as always!<br />Daniel</p>]]></description>
			<author><![CDATA[dummy@example.com (Aerael)]]></author>
			<pubDate>Mon, 20 Jun 2022 19:58:03 +0000</pubDate>
			<guid>http://sobereva.com/wfnbbs/viewtopic.php?pid=2558#p2558</guid>
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			<title><![CDATA[Re: Integrate orbital density in external basins]]></title>
			<link>http://sobereva.com/wfnbbs/viewtopic.php?pid=2557#p2557</link>
			<description><![CDATA[<p>Dear Daniel,</p><p>In the aforementioned function you can see an option &quot;-4: Export composition of every basin in every orbital to orbcomp.txt&quot;, after exporting the orbcomp.txt, you can easily use such as &quot;grep&quot; command in Linux to extract composition of an basin in all orbitals.</p><p>Best regards,</p><p>Tian</p>]]></description>
			<author><![CDATA[dummy@example.com (sobereva)]]></author>
			<pubDate>Mon, 20 Jun 2022 17:26:28 +0000</pubDate>
			<guid>http://sobereva.com/wfnbbs/viewtopic.php?pid=2557#p2557</guid>
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			<title><![CDATA[Re: Integrate orbital density in external basins]]></title>
			<link>http://sobereva.com/wfnbbs/viewtopic.php?pid=2556#p2556</link>
			<description><![CDATA[<p>Dear Tian,</p><br /><p>thanks so much, this works, but needs improvement. <img src="http://sobereva.com/wfnbbs/img/smilies/smile.png" width="15" height="15" alt="smile" /></p><p>Would it be possible to include a simple switch option to ONLY integrate for occupied MOs, instead of over the whole set?<br />(Or, alternatively, to be able to specify a set like 2,4-8,11-19 like for other functionalities?)<br />It is very tedious to do all MOs by hand, and the whole virtual set is probably never needed.</p><p>That would be awesome to have!</p><br /><p>Thanks so much and all the best!<br />Daniel</p>]]></description>
			<author><![CDATA[dummy@example.com (Aerael)]]></author>
			<pubDate>Mon, 20 Jun 2022 15:38:39 +0000</pubDate>
			<guid>http://sobereva.com/wfnbbs/viewtopic.php?pid=2556#p2556</guid>
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			<title><![CDATA[Re: Integrate orbital density in external basins]]></title>
			<link>http://sobereva.com/wfnbbs/viewtopic.php?pid=2530#p2530</link>
			<description><![CDATA[<p>Dear Daniel,</p><p>Please perform AIM basin analysis as usual (see example in Section 4.17.1 of manual) first. After generation of the basins, you can find an option &quot;11 Calculate orbital compositions contributed by various basins&quot; (if you don&#039;t see it, that means your version is too old). By using it you can obtain contribution of every AIM basin to specific orbitals. Assume that basin 4 contribute to MO 10 by 34%, and MO 10 is a doubly occupied orbital, then MO 10 contribute to population of basin 4 by 0.34*2=0.68; in other words, 0.68 of 2.0 electrons in MO 10 belongs to basin 4.</p><p>Best,</p><p>Tian</p>]]></description>
			<author><![CDATA[dummy@example.com (sobereva)]]></author>
			<pubDate>Sat, 11 Jun 2022 00:54:18 +0000</pubDate>
			<guid>http://sobereva.com/wfnbbs/viewtopic.php?pid=2530#p2530</guid>
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			<title><![CDATA[Integrate orbital density in external basins]]></title>
			<link>http://sobereva.com/wfnbbs/viewtopic.php?pid=2529#p2529</link>
			<description><![CDATA[<p>Dear Tian Lu &amp; MutliwWFN folks,</p><br /><p>is there a way to find out how much each orbital contributes to the occupation of a QTAIM basin?</p><p>I have tried to get those numbers myself, but failed:</p><p>By loading a wave function, doing a basin analysis for the whole electronic density, I obtain the QTAIM basins.<br />If I now go ahead and delete all orbitals but the one of interest, the options for basin analysis vanish and I cannot integrate my (by now one-orbital) electron density in these basins anymore.<br />My next try was loading a modified wave function file containing only the orbital of interest, trying to load the basin cube on top of it, and then to integrate this one-orbital density within the ell-electron basins -- But I do not find the option to do so.</p><br /><p>Thanks so much as always for your great help, it is most appreciated! <img src="http://sobereva.com/wfnbbs/img/smilies/smile.png" width="15" height="15" alt="smile" /><br />Daniel</p>]]></description>
			<author><![CDATA[dummy@example.com (Aerael)]]></author>
			<pubDate>Fri, 10 Jun 2022 13:15:38 +0000</pubDate>
			<guid>http://sobereva.com/wfnbbs/viewtopic.php?pid=2529#p2529</guid>
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