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		<title><![CDATA[Multiwfn forum / Multiwfn crashes when loading .fchk files]]></title>
		<link>http://sobereva.com/wfnbbs/viewtopic.php?id=1504</link>
		<description><![CDATA[The most recent posts in Multiwfn crashes when loading .fchk files.]]></description>
		<lastBuildDate>Mon, 12 Aug 2024 19:24:07 +0000</lastBuildDate>
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			<title><![CDATA[Re: Multiwfn crashes when loading .fchk files]]></title>
			<link>http://sobereva.com/wfnbbs/viewtopic.php?pid=4507#p4507</link>
			<description><![CDATA[<p>I think you didn&#039;t correctly configuration the running environment, please check Section 2.1.2 of Multiwfn manual on how to install Multiwfn in a fully correct way.</p>]]></description>
			<author><![CDATA[dummy@example.com (sobereva)]]></author>
			<pubDate>Mon, 12 Aug 2024 19:24:07 +0000</pubDate>
			<guid>http://sobereva.com/wfnbbs/viewtopic.php?pid=4507#p4507</guid>
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			<title><![CDATA[Multiwfn crashes when loading .fchk files]]></title>
			<link>http://sobereva.com/wfnbbs/viewtopic.php?pid=4503#p4503</link>
			<description><![CDATA[<p>Hello Tian,<br />I have been running Multiwfn on a supercomputer (software installed as a module) in batch mode through a bash script with .fchk files as input. The software seems to be working with a few structures and not with others. The error output when running Multiwfn in both batch/silent mode and interactive mode is the same as shown below:</p><p>forrtl: severe (174): SIGSEGV, segmentation fault occurred<br />Image&#160; &#160; &#160; &#160; &#160; &#160; &#160; PC&#160; &#160; &#160; &#160; &#160; &#160; &#160; &#160; Routine&#160; &#160; &#160; &#160; &#160; &#160; Line&#160; &#160; &#160; &#160; Source&#160; &#160; &#160; &#160; &#160; &#160; &#160;<br />Multiwfn&#160; &#160; &#160; &#160; &#160; &#160;00000000020BE6F3&#160; Unknown&#160; &#160; &#160; &#160; &#160; &#160; &#160; &#160;Unknown&#160; Unknown<br />libpthread-2.28.s&#160; 00007F76B3ED7CF0&#160; Unknown&#160; &#160; &#160; &#160; &#160; &#160; &#160; &#160;Unknown&#160; Unknown<br />Multiwfn&#160; &#160; &#160; &#160; &#160; &#160;0000000000551958&#160; Unknown&#160; &#160; &#160; &#160; &#160; &#160; &#160; &#160;Unknown&#160; Unknown<br />Multiwfn&#160; &#160; &#160; &#160; &#160; &#160;000000000077C404&#160; Unknown&#160; &#160; &#160; &#160; &#160; &#160; &#160; &#160;Unknown&#160; Unknown<br />Multiwfn&#160; &#160; &#160; &#160; &#160; &#160;0000000000710B92&#160; Unknown&#160; &#160; &#160; &#160; &#160; &#160; &#160; &#160;Unknown&#160; Unknown<br />Multiwfn&#160; &#160; &#160; &#160; &#160; &#160;00000000008529C5&#160; Unknown&#160; &#160; &#160; &#160; &#160; &#160; &#160; &#160;Unknown&#160; Unknown<br />Multiwfn&#160; &#160; &#160; &#160; &#160; &#160;0000000000431822&#160; Unknown&#160; &#160; &#160; &#160; &#160; &#160; &#160; &#160;Unknown&#160; Unknown<br />libc-2.28.so&#160; &#160; &#160; &#160;00007F76B3B3AD85&#160; __libc_start_main&#160; &#160; &#160;Unknown&#160; Unknown<br />Multiwfn&#160; &#160; &#160; &#160; &#160; &#160;0000000000431729&#160; Unknown&#160; &#160; &#160; &#160; &#160; &#160; &#160; &#160;Unknown&#160; Unknown</p><p>I am using Multiwfn version 3.8. Here is a snippet of the bash script I am using to run Multiwfn in batch mode to give molecular ESP minima and maxima values:</p><p>#!/bin/bash</p><p>## Job parameters<br />#SBATCH -p shared<br />#SBATCH -c 4<br />#SBATCH --mem=10G<br />#SBATCH --gres=tmp:10G <br />#SBATCH -J MWFN_AC<br />#SBATCH -t 00-00:30:00</p><p>## Errors and outputs<br />#SBATCH -o output_%j.out<br />#SBATCH -e errors_%j.err</p><p>module load multiwfn/3.8</p><p>mkdir multiwfn_inputs<br />cd fchk_files<br />cp *.fchk ../multiwfn_inputs<br />cd ../multiwfn_inputs<br />for i in *.fchk; do mkdir ${i%.fchk}; mv $i ${i%.fchk}; done<br />for j in */<br />do cd $j<br />for x in *.fchk<br />do echo Running ${x} ...; echo -e &quot;12\n0\n2\n6\n5\nESP.pdb\n-1\n-1\nq\n&quot; | Multiwfn ${x} &gt; ./${x%.fchk}_ESP.txt<br />mv ESP.pdb ${x%.fchk}.pdb<br />done<br />cd ../<br />done</p><p>The single point Gaussian calculations for all test systems were done with the same functional and basis set combination (wB97XD/Def2QZVPP). The systems tested were small organic molecules of similar size. The software works for 2-acetamidobenzamide, methanol and paracetamol. It crashes with picolinamide, benzamide, and nicotinamide.</p><p>I can share the .fchk files with you by email if that might be helpful.</p><p>Thanks very much <img src="http://sobereva.com/wfnbbs/img/smilies/big_smile.png" width="15" height="15" alt="big_smile" /></p>]]></description>
			<author><![CDATA[dummy@example.com (amritachatto)]]></author>
			<pubDate>Mon, 12 Aug 2024 11:17:03 +0000</pubDate>
			<guid>http://sobereva.com/wfnbbs/viewtopic.php?pid=4503#p4503</guid>
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